rs28006819 SNP Detail

Summary

• ID
  rs28006819
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:62314554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGAGTT CCTGAATAAG
  TGATAGATCA TTCATCTAGG CAAACAAATC ACTCACCCAG TACACACATA TCAATAACCC
  ACTCATCCAC ATTGTATGGA ATAAATTTGT ATTCTCTTTG TGGGGAGATT TTAAATGTCA
  ATTAAAATGT AATGTGCACC ATGTTAATGA GACACAGAAG GCAAAATGAG AATACACAAA
  S
  TCACTGATGC TGATAGCAAA GGGTCTATTA TTTCTGTTTT CATCTTAAAA TGAAATAAAA
  ATGACTTAAA TTTAATTTTA CTGAGAAGGG GTGGGGCATT AGAATACAAA GAGAGATACA
  GGAGGCAAAC TATTGAGATG AGATGCATGC TGTTTCTTTC TATAGCTTCC AGCGTGTATA
  TAGGTCCTTA CTAATTATAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38155541	NES09308800	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28006819					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155541	NES09308800	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62314554 () rs orientation: forward

Symbol	Name	Function Class
Gcg	glucagon	560 bp upstream
Rr366692	regulatory region 366692	within coordinates
Rr557879	regulatory region 557879	1055 bp proximal
Tssr24273	transcription start site region 24273	557 bp upstream