rs28006830 SNP Detail

Summary

• ID
  rs28006830
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:62312385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGCCAAT CAGACAAAAC
  AGCATAATAG AAATTATGCT TTCATCTATC TTGATGATGA ACAACACATG GCTACTTTGA
  CATGTCTTTG ATTGTACCTT TCAATGGTAA TGTGTTATTA TACTATTGAA GAGTTAAAGT
  TTCCTTTTAG GACCATAATG CTATTGGAAA GCCTCTTGCA AAAGACTGAA CAATGCCAAC
  K
  CAGTCCTAAA TAAACCCTTC AACCCAAAGT CCCTGAAGGT TCTGAGATGG CCCTGGTCAT
  GTTTTTAAAG GGTAGACTTT GAAAGGACAA TACAGAGAGA ACATATGTCT TCCAATGCAA
  CCTCTTGGTA TAACTCACTT CCCTTTAGCC ACTTTTTGAA AGTTAAGAAA CTTCTGAGAA
  ATAAAATAAT TAACCCATTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38155552	NES09308835	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28006830					SNP	T	T	T	T	T	T	G	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155552	NES09308835	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62312385 () rs orientation: forward

Symbol	Name	Function Class
Gcg	glucagon	within coordinates
Rr366692	regulatory region 366692	1569 bp upstream
Tssr24272	transcription start site region 24272	1542 bp upstream
Tssr24273	transcription start site region 24273	1596 bp downstream