rs28011307 SNP Detail

Summary

• ID
  rs28011307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84657956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCCTCGCG CCCTCCAGCC CCCCCGGGGG GGTGGTACTA
  GGGTGAACCG GGAGGGATCG ATGCTGACTG ATCATGTCCG CTCCTAGGAC TAAAGACCAG
  R
  AGGCTATTCT CTCCACGGTG CTAAGTTGAC ATGGATCCGC TCAGAGCCCA GCAGCTGGCT
  GCGGAGCTGG AGGTGGAGAT GATGGCTGAC ATGTACAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38172529	NES09240127	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A		A	G	G		G	G	A	G		A
ss45278067	mCV23821579	ABI	CRAMUS_MOUSE	f	SNP	G	A					G	A
ss146834935	ENSMUSSNP5730018	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss320372123	CHEV_2_84667769	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28011307					SNP	G	A	A	A	G	A	G	A	G	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172529	NES09240127	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84657956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11868	CpG island 11868	462 bp distal
Cpgi11869	CpG island 11869	within coordinates
Gm75309	predicted gene, 75309	776 bp upstream
Rr397100	regulatory region 397100	496 bp downstream
Timm10	translocase of inner mitochondrial membrane 10	within coordinates
Tssr18699	transcription start site region 18699	545 bp downstream
Tssr18700	transcription start site region 18700	514 bp downstream