rs28011311 SNP Detail

Summary

• ID
  rs28011311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84657230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTAAAGTG
  CTCCAGGTGT TTTAACATGC AAAATTGACA GGCTCCTTTG GGAAACGTTC TCCTTTCTTC
  ACATAAGATC CGTCTGCGCT CTGGCGTGGG CTCTCCATGG TGGGTTCAGG GAGCCAAGCT
  TCTTCCACAC TGCAAACGCT CAGGCGTCTC CCGGACAACC GGAGGGATGG AATGCTAACA
  R
  GGCTGCCGGC GCTCTGCCAC TCACTCAGCA TTCTATGGTA CTTTGGAGTC CACTCTAGCA
  AATTAAGGTC GGTTTCTCTA TGGTAGCCGG TTTCCCAGCG CAGCCTGGTC GGCGTTTTCT
  TCCGGATCAA AGAAGAGGCT AGACTTCCTT CCGGAAGTGA CCCACGTGCT TCTTATTTCG
  CCTGCCTTGG TACCCGGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38172533	NES09240174	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28011311					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172533	NES09240174	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84657230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11868	CpG island 11868	within coordinates
Cpgi11869	CpG island 11869	605 bp proximal
Gm75309	predicted gene, 75309	50 bp upstream
Rr397100	regulatory region 397100	within coordinates
Rr560357	regulatory region 560357	61 bp distal
Rr560358	regulatory region 560358	within coordinates
Rr560359	regulatory region 560359	1743 bp proximal
Timm10	translocase of inner mitochondrial membrane 10	135 bp upstream
Tssr18699	transcription start site region 18699	126 bp upstream
Tssr18700	transcription start site region 18700	193 bp upstream