rs28011312 SNP Detail

Summary

• ID
  rs28011312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84657126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTTTT TTTTTTTTAA AGTGCTCCAG GTGTTTTAAC
  ATGCAAAATT GACAGGCTCC TTTGGGAAAC GTTCTCCTTT CTTCACATAA GATCCGTCTG
  Y
  GCTCTGGCGT GGGCTCTCCA TGGTGGGTTC AGGGAGCCAA GCTTCTTCCA CACTGCAAAC
  GCTCAGGCGT CTCCCGGACA ACCGGAGGGA TGGAATGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38172534	NES09240173	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	C	C		C	C	T	C		T
ss146834925	ENSMUSSNP6237727	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss320372120	CHEV_2_84666939	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28011312					SNP	C	T	T	T	C	T	T	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172534	NES09240173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84657126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11868	CpG island 11868	39 bp proximal
Cpgi11869	CpG island 11869	709 bp proximal
Gm75309	predicted gene, 75309	within coordinates
Rr397100	regulatory region 397100	33 bp upstream
Timm10	translocase of inner mitochondrial membrane 10	239 bp upstream
Tssr18699	transcription start site region 18699	230 bp upstream
Tssr18700	transcription start site region 18700	297 bp upstream