rs28011313 SNP Detail

Summary

• ID
  rs28011313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84656928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGCAAAA GTCAGGCATA
  ATGGCGCTTA TCTGTAGCCG AAGCACTAGT GAGGTGGAGG CAGGTTCGTA AGTTCTAGGT
  CATCTTCGGC TACACCGCAA ATTAGAGAGC AGCCTAGGTT CCATGGGACC CTGCCTCAAA
  AGCAAATAAA GACAATCTCT ATACATGTTT CTTTTTTTCT GCGAGCAGCG ATCGTGTATC
  Y
  TCTCTGCAAC TCCACTAGTT AATGTTGCAC ACTGCTCCCC GGGATTCTGA TTTCAGGGGT
  ATGAGGTAAC GTCTGGGCGC TGAGGTGTTT TTTTTTTTTT TTTTTTTTTT TTTTTAAAGT
  GCTCCAGGTG TTTTAACATG CAAAATTGAC AGGCTCCTTT GGGAAACGTT CTCCTTTCTT
  CACATAAGAT CCGTCTGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38172535	NES09240217	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28011313					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172535	NES09240217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84656928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11868	CpG island 11868	237 bp proximal
Cpgi11869	CpG island 11869	907 bp proximal
Gm75309	predicted gene, 75309	within coordinates
Rr397100	regulatory region 397100	231 bp upstream
Timm10	translocase of inner mitochondrial membrane 10	437 bp upstream
Tssr18699	transcription start site region 18699	428 bp upstream
Tssr18700	transcription start site region 18700	495 bp upstream