rs28011314 SNP Detail

Summary

• ID
  rs28011314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84656515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGCACTTT GGGAAAAAGA CTTCATCTGC TAAAGATAAT
  AGATCAAGAA AATGTGACTA AATAGTAAGA ATTATTAAAT CTTGGGGATA GATTCAATGA
  Y
  GTTCATTAGA CTGTGTTCTG TGTTGTGAAT TTGCCCTAAT AAAATTTTAA AGGGATAAAC
  CCAATGCTTT TTATTATTAC ATTTATTTAT TTACTTACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38172536	NES09240269	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C		T	C	C		C	C	T	C		T
ss45277961	mCV23821568	ABI	CRAMUS_MOUSE	f	SNP		C	T				C	T
ss146834914	ENSMUSSNP1044074	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss320372119	CHEV_2_84666328	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28011314					SNP	C	C	T	T	T	C	C	T	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172536	NES09240269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84656515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11868	CpG island 11868	650 bp proximal
Cpgi11869	CpG island 11869	1320 bp proximal
Gm75309	predicted gene, 75309	within coordinates
Rr397100	regulatory region 397100	644 bp upstream
Timm10	translocase of inner mitochondrial membrane 10	850 bp upstream
Tssr18699	transcription start site region 18699	841 bp upstream
Tssr18700	transcription start site region 18700	908 bp upstream