rs28011315 SNP Detail

Summary

• ID
  rs28011315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84656451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCAAGGA CACATGTTCT
  TATAAATAAA TTTAAATTTA AAAATAGTAT ATCAAATGAC CTGTGTAGTT CAGTTGTGGA
  GGGTTTGCAT GAGACCCTGG ATTCAACCTT CAGCACTGTG GAAGAGAGAT GAAAAAAACA
  TCACTATTAG CTGAGAATGT GAAAATAGCA CTTTGGGAAA AAGACTTCAT CTGCTAAAGA
  Y
  AATAGATCAA GAAAATGTGA CTAAATAGTA AGAATTATTA AATCTTGGGG ATAGATTCAA
  TGACGTTCAT TAGACTGTGT TCTGTGTTGT GAATTTGCCC TAATAAAATT TTAAAGGGAT
  AAACCCAATG CTTTTTATTA TTACATTTAT TTATTTACTT ACTTTATTTA TTGTGCATGT
  GTAGGGCTAT AATAAAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38172537	NES09240268	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28011315					SNP	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172537	NES09240268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84656451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11868	CpG island 11868	714 bp proximal
Cpgi11869	CpG island 11869	1384 bp proximal
Gm75309	predicted gene, 75309	within coordinates
Rr397100	regulatory region 397100	708 bp upstream
Rr560357	regulatory region 560357	31 bp proximal
Rr560358	regulatory region 560358	719 bp proximal
Timm10	translocase of inner mitochondrial membrane 10	914 bp upstream
Tssr18699	transcription start site region 18699	905 bp upstream
Tssr18700	transcription start site region 18700	972 bp upstream