rs28019319 SNP Detail

Summary

• ID
  rs28019319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:59957961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGACTG TCTCTCTAGT
  AAAGCTGGCC TAAGGTTCAA ATGCATGATT TAATCCTGAG TTTGCCAGGC TTTGCGCTCC
  TTACAAACTA TAATTTCAGT AACTACCTAA TAACTGTAAT AAAGACAATA ATTCTCCTAC
  AATATATTAT TAACTCATAT TTAATTAACT CAGAGGCCAA GCTCTGCACA TGTATGACCA
  R
  GTCACCAATT CCACCATCTC AGAATTGACT AATAATATCC AGATAAACAC AGATTAAAAT
  GTAAATATGA AGGGTAGCAT GTAGCCTAGG ATCCTAAGTC ACATCGGAAA ACTCTCACAT
  TATTCTATAA TGGCGGTCAT TATTCAGATG GAACTTAGCA ATAGCTCTGT ATATAAAGTT
  GAATGTTGAT ATTTCAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38162741	NES09322173	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28019319					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38162741	NES09322173	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:59957961 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Cpgi11675	CpG island 11675	1906 bp distal
Gm13620	predicted gene 13620	1798 bp downstream
Rr557598	regulatory region 557598	1931 bp distal
Rr557599	regulatory region 557599	1430 bp distal
Rr557600	regulatory region 557600	88 bp distal
Tssr24182	transcription start site region 24182	1999 bp upstream
Tssr24183	transcription start site region 24183	1842 bp upstream
Tssr24184	transcription start site region 24184	1794 bp upstream