rs28019320 SNP Detail

Summary

• ID
  rs28019320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:59957835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACATTC CCGGAATACA
  GATTTTAATC ATTTCACTAC ACCACACTCA GTAATTTCAT TAAAACCTGG AATCTTCCAT
  CCCCAGAAAA GCATTTAATT TCAATGACAT ACAATTTCTC TTTTAGCAGC AGACTGTCTC
  TCTAGTAAAG CTGGCCTAAG GTTCAAATGC ATGATTTAAT CCTGAGTTTG CCAGGCTTTG
  Y
  GCTCCTTACA AACTATAATT TCAGTAACTA CCTAATAACT GTAATAAAGA CAATAATTCT
  CCTACAATAT ATTATTAACT CATATTTAAT TAACTCAGAG GCCAAGCTCT GCACATGTAT
  GACCAGGTCA CCAATTCCAC CATCTCAGAA TTGACTAATA ATATCCAGAT AAACACAGAT
  TAAAATGTAA ATATGAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38162742	NES09322172	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	T	C		C	C	C	C	C	C	C	C	C
ss45230473	mCV25043970	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss146647252	ENSMUSSNP6104095	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28019320					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38162742	NES09322172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:59957835 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Cpgi11675	CpG island 11675	1780 bp distal
Gm13620	predicted gene 13620	1672 bp downstream
Rr557598	regulatory region 557598	1805 bp distal
Rr557599	regulatory region 557599	1304 bp distal
Rr557600	regulatory region 557600	within coordinates
Tssr24181	transcription start site region 24181	1893 bp upstream
Tssr24182	transcription start site region 24182	1873 bp upstream
Tssr24183	transcription start site region 24183	1716 bp upstream
Tssr24184	transcription start site region 24184	1668 bp upstream