rs28019321 SNP Detail

Summary

• ID
  rs28019321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:59957610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGCGGC GATGCTGCTG
  TCTAATAGGG GCATCTGAAA AGACGGCTGC TCATTACATA GTAATGTATG CTAAAAATTA
  GTGAAGATGA TGTCTCGGGA GACTGATGCT AAATAAATTA ATGTGCTGAT ATGTTTTTAA
  TTATTATTTT TGTAGTAGTT TATTTCAATC TTAGGATTCA CATTGAGCAG CAGAGCTGTG
  Y
  GAGCACTTAT TGATTTTTTT TCCCTGCCAC ATTCCCGGAA TACAGATTTT AATCATTTCA
  CTACACCACA CTCAGTAATT TCATTAAAAC CTGGAATCTT CCATCCCCAG AAAAGCATTT
  AATTTCAATG ACATACAATT TCTCTTTTAG CAGCAGACTG TCTCTCTAGT AAAGCTGGCC
  TAAGGTTCAA ATGCATGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38162743	NES09322171	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28019321					SNP	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38162743	NES09322171	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:59957610 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Cpgi11675	CpG island 11675	1555 bp distal
Gm13620	predicted gene 13620	1447 bp downstream
Rr557598	regulatory region 557598	1580 bp distal
Rr557599	regulatory region 557599	1079 bp distal
Rr557600	regulatory region 557600	within coordinates
Tssr24181	transcription start site region 24181	1668 bp upstream
Tssr24182	transcription start site region 24182	1648 bp upstream
Tssr24183	transcription start site region 24183	1491 bp upstream
Tssr24184	transcription start site region 24184	1443 bp upstream