rs28025632 SNP Detail

Summary

• ID
  rs28025632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60748493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCACCAA ACTCTTCCTT
  GGTTGAGCTC AATTCTATCA GCCCACCCTT CAACAAGTTT GTCTTAACTC AACCTTTGGA
  GATAATCGGT CAAGCAGAAC TCTTGTGGTC TTTCCAGTGG GTGGTTGAAG GAAGACAATG
  ATGCTGGCTT TTACAAGTTT GCTGTACTCA GCTAAGCACT TTTCTCATGT TCTGTAACCA
  Y
  AGTCACACAT TTTCTGGAGA CTGCGTGTAT GATACAATCC CCTGGAGTGT CCATATGCTG
  GCTGGTAGTG ACGCACATCT TTGATCCCAG CACTTGGAGG CAGAGGCAGG CGGACCTCAG
  AGTTAGAGGT CAGCCTCGTC TACAGAGCAA CTTCTAAGAC AACTGGAGCT AAACAAAAAC
  CCTGTCTCAA AATAATCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38159752	NES09310347	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28025632					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159752	NES09310347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60748493 () rs orientation: forward

Symbol	Name	Function Class
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Tssr24240	transcription start site region 24240	1657 bp upstream