rs28025633 SNP Detail

Summary

• ID
  rs28025633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60748155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACAGTCG TCAGCTCCAC
  GTAACGTAAG TCAAGAACCA AATGGTTAAA CATTTGGGCA AATAGAATCT TCTTTGGGGG
  GAGGAAGTGT TTTTGCAACC TTATATGAAA CATTTACTTC ATATTAAAAT AAAAAAGTAA
  CATCAACCTT CAAAGAGTTT TAAGCTTTGA ACTAGTATCA CTGAATGGGA CCCTTACAAG
  Y
  AACCATCACC TAAGTTATCC TTATCTGACC CAATGTTTGA AGTACCTACT TGGCTGTGAA
  ACCAGTTTGC CTGAAGTCTT ACTTCTCAGG GCTCATGGCT ACCCTTCTCC AAGATGGACC
  AAATGCTCTC TAGGTAATTA GCACCAAACT CTTCCTTGGT TGAGCTCAAT TCTATCAGCC
  CACCCTTCAA CAAGTTTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38159753	NES09310346	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28025633					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159753	NES09310346	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60748155 () rs orientation: forward

Symbol	Name	Function Class
Rbms1	RNA binding motif, single stranded interacting protein 1	within coordinates
Rr49832	regulatory region 49832	1755 bp distal
Rr49833	regulatory region 49833	1355 bp distal
Rr62013	regulatory region 62013	within coordinates
Tssr24240	transcription start site region 24240	1319 bp upstream