rs28025638 SNP Detail

Summary

• ID
  rs28025638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60746231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGTGTAT GAGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTAG GAATAAGTGG AAAGGCAGGA GAAGAGAGAA
  TTTTTCCCCA CTAGGAGGGT TGTGTCTTGA TTATTTTTGT AGAATGTGTA CAGTGTGATC
  CTAGTATCTT CAGGACAGAG GAGGTCTTGA GACAGCGCCT GGAGGGCATG CTGCAGAGGC
  R
  CAAGCTGACT AGATCAGCAC TGCTGGGAGC ACAGTCTTTG TAAGAATGCT ACACAATCAA
  ACACACTTGC TTCGTTTACA CGTAAGCATC TATCAAGGCG TGTGGGAATC ACTGTGAATC
  ACGGAGAGGC TTCCACTGGA TATGGGGTCC GAGTACCTGG AGATCATCAT CACAAAACTC
  TAGGCTGAAT ACTTCACTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38159758	NES09310375	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28025638					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159758	NES09310375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60746231 () rs orientation: forward

Symbol	Name	Function Class
Rbms1	RNA binding motif, single stranded interacting protein 1	within coordinates
Rr49832	regulatory region 49832	within coordinates
Rr49833	regulatory region 49833	370 bp proximal
Rr62013	regulatory region 62013	971 bp proximal
Tssr24240	transcription start site region 24240	598 bp downstream