rs28025668 SNP Detail

Summary

• ID
  rs28025668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60735921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAAAAA AAAAAAGAAA
  GAAAAAGAAA AAAATTTTTG CCACTAGAGG GGGTTCAGAA TTGCCTTTGC AGCAAACGCC
  CTGGAAGCCG ATGCTAACAT CTGGAGCAAC ATTAAGTATG GCTAGAGTAA ACTTCCTTTT
  CATTACTCAC TGGGGATAAG TTAAAAATAA GTTTTTGATG GGAGTAGATG AGAAAACCCG
  Y
  TGTAAGTATG TGACAGTTAG GTATGCAACT TAACAAAACC CCTCAAATCT CTGAAACTGC
  TATAAACTGC ACTTGGTTCT AACTGCTTAA TCATTAGGAA TGGGGTCTTT TAGTTTCTCA
  AGCTTTTCTT TGTTTTATTT TCAAGACAGA GTCTCAGATT GCCCAGGCCG GCTCCAACCT
  CGCTATGTAG GTGAGGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38159788	NES09310824	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28025668					SNP	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159788	NES09310824	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60735921 () rs orientation: forward

Symbol	Name	Function Class
6030432P03Rik	RIKEN cDNA 6030432P03 gene	within coordinates
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr557738	regulatory region 557738	1645 bp distal
Rr557739	regulatory region 557739	1113 bp distal
Rr557740	regulatory region 557740	within coordinates
Tssr24239	transcription start site region 24239	200 bp upstream