rs28025671 SNP Detail

Summary

• ID
  rs28025671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60735180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGCTTCC ACAAACAATT
  GGGAATGCTG TTTTGTAAGA TCTTTTCCAG TAGCAGTATA GAAAATATCA TTTGAAAAGG
  CAGGACTAGA TCTGCCTGTC GATGGGCAGG TGATGCGGTC AGCGAATGAA TATCGTTAGC
  TAACTTCTGT GTCCCCATTC CCAACCTTGG CAAGAGTGGC CTCTTTTGTG CAGACTGATG
  R
  AGATAGTTAT GAGTGTTGCC TCTCCACTGG CTCCAACAAA CCAAATCCAA ACTGTGTTTA
  TTAAAGATGA AAGTGTAAGG ATTTGGCACC TGTATTTGTT TAAGTTTGGC TACTGTGGCT
  TTGCAAAGCC CTGCATCCAA TCAGTACCTT TTGCTCTCTA GCTGAAGAAG GACATCTATT
  TAAAAAAAAA AACATCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38159791	NES09310821	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28025671					SNP	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159791	NES09310821	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60735180 () rs orientation: forward

Symbol	Name	Function Class
6030432P03Rik	RIKEN cDNA 6030432P03 gene	370 bp downstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr396989	regulatory region 396989	1276 bp downstream
Rr557737	regulatory region 557737	1685 bp distal
Rr557738	regulatory region 557738	904 bp distal
Rr557739	regulatory region 557739	372 bp distal
Rr557740	regulatory region 557740	433 bp proximal
Tssr24238	transcription start site region 24238	1996 bp upstream
Tssr24239	transcription start site region 24239	538 bp downstream