rs28025672 SNP Detail

Summary

• ID
  rs28025672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60734591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGAGAAA AAACAAGCAG
  GGTTCTTCTG AGGCAGGCAG CATGTGCCTT TGTCACCTAT ATATTTGAAT AATCATCTCA
  CCAAGCTGTT TACAACACAT ACAATGAGTT GGGGGTTTGG GTTGTTTGTT TTCAAAATTA
  AAGTTCTACT TAAGCTCAGT TTTTTCTTAA ATGTCACTCT TTAGTGCCAT GAGGTTTCTT
  Y
  TCTCTGTATT CATAGAAATG TAGTTTGGCA AATGATGGGG CGTTCTCAAT GGAGGAAATG
  CTACCAGCTC ACAACACCGG ATGTAATTGA GACCACAAGA GATGCGCGCT TGGTTACAAG
  AGCTGAACTT AAGAGGTAGT CGAAGGAAGC AGCCCAACAT TTGATTGAGT ACACTGTTTT
  AGTCTATCTG TACTCTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38159792	NES09310820	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs28025672					SNP	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159792	NES09310820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60734591 () rs orientation: forward

Symbol	Name	Function Class
6030432P03Rik	RIKEN cDNA 6030432P03 gene	959 bp downstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr396989	regulatory region 396989	687 bp downstream
Rr557737	regulatory region 557737	1096 bp distal
Rr557738	regulatory region 557738	315 bp distal
Rr557739	regulatory region 557739	within coordinates
Rr557740	regulatory region 557740	1022 bp proximal
Tssr24237	transcription start site region 24237	1480 bp upstream
Tssr24238	transcription start site region 24238	1407 bp upstream
Tssr24239	transcription start site region 24239	1127 bp downstream