rs28025673 SNP Detail

Summary

• ID
  rs28025673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60734179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAATCAT TTGGTTAGAA
  ACACTGACCC TGCTTGACGG TTCCCATTGG GTGCTGTTTA CAAGAAATCT CCCCAGCAGG
  GCACCTGCGT CCAGTTTCCC AATCCTGTGG TTTGCTTACG CTACAGGGCT GTGTTCCCGG
  CAAGTTCAAA CCGTTAAGTT GAATTTCATT CTTGTCTGGG AGTAACTTTT ACTCAATTGA
  Y
  TGCAGCTGTG TGCACAGAAT ACTGTTCCAA GAAACATGTC TATGAGAAGA CCATTTTAAG
  AAATGCAAAT TAACTTCCAT TATTTCAAGT CTGTACAACT AGTGTAGGGA CGGAATCTCT
  GGTCTCTGTT AGACAAATGG ATATATATAT ATATATATGA ATGATATATA TATATATATA
  TATATATATA TATATATATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38159793	NES09310864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28025673					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159793	NES09310864	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60734179 () rs orientation: forward

Symbol	Name	Function Class
6030432P03Rik	RIKEN cDNA 6030432P03 gene	1371 bp downstream
Gm74814	predicted gene, 74814	1971 bp upstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr396989	regulatory region 396989	275 bp downstream
Rr557735	regulatory region 557735	1982 bp distal
Rr557736	regulatory region 557736	1690 bp distal
Rr557737	regulatory region 557737	684 bp distal
Rr557738	regulatory region 557738	within coordinates
Rr557739	regulatory region 557739	304 bp proximal
Rr557740	regulatory region 557740	1434 bp proximal
Tssr17890	transcription start site region 17890	1868 bp downstream
Tssr24237	transcription start site region 24237	1068 bp upstream
Tssr24238	transcription start site region 24238	995 bp upstream
Tssr24239	transcription start site region 24239	1539 bp downstream