rs28025680 SNP Detail

Summary

• ID
  rs28025680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60732876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATAACTA GAAAGAGCTC
  CCTCGACACA CACACACATG TACAAACATA TACAAATTAA TTATCCTTCC TCAATTTTAA
  AACACACATT TAATGTTTAC ATAATACCAA TACCTTTAAA ACAGATTATA ATTTCGTAGC
  TACAACTTAG TGTCAGTTGT GGCAAATTCT CACAGAGTAT GAACCCCTGG CTCCTTTGAT
  Y
  GGAAGCCTAC ATGTTTTATG CCAAAGGACA CATTTTTCTA GCTACTAGAA GCCAGCAGAT
  CTGTGATGAG AGAGTTTTAA GAACTGTGTT CTATTTTGGG AATGGGCCCT TCCTGTCCAG
  CTCTTGTTGC CACCTCATTC TTGGTGACTT CAGTGACTTC TAAACCCACT TCAGGTCAGC
  AGCCTCTCTT TAATTAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38159800	NES09310931	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28025680					SNP	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159800	NES09310931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60732876 () rs orientation: forward

Symbol	Name	Function Class
Gm74814	predicted gene, 74814	668 bp upstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr396989	regulatory region 396989	727 bp upstream
Rr557735	regulatory region 557735	679 bp distal
Rr557736	regulatory region 557736	387 bp distal
Rr557737	regulatory region 557737	19 bp proximal
Rr557738	regulatory region 557738	1031 bp proximal
Rr557739	regulatory region 557739	1607 bp proximal
Tssr17890	transcription start site region 17890	565 bp downstream
Tssr24237	transcription start site region 24237	230 bp downstream
Tssr24238	transcription start site region 24238	302 bp downstream