rs28025683 SNP Detail

Summary

• ID
  rs28025683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60732221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTGAAA CTCACAAAGC
  CAAGAGCAGC TGGAAGATAG GAATGGTCGG CGCTCAAGGG GACATTTTAG AACTCTTGCC
  TTTAAAACTA TGCCCGAACC AAAGGAGGTT ACCCGGCTTG GCGGGTATCC ACAGGCTCCG
  TGCTCACTGG TCAGTCCTGA GGTGCAGGGA GGCAGCATGC CTAAGCTCTG TTTCCTAACT
  Y
  GGGGTGATCC CCTTATATGA CGTCAGTACA GCCTCACCCC ACTACTTAAG ATAAACAGGA
  ATGAGTCTCT CTCACAAAGT GGCCTGCTTA ACAAATACTA ACAGAGTTTT GGGAGGATCA
  GATTCTTGCA GATTAATTCA TTTCAATGAA TTAAATGTTG CAGTTCTGGG CTCAGGCTCA
  GGCTTCGTGT TCAACAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38159803	NES09310928	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C	C	C	C	C	C		C	C	T
ss146652214	ENSMUSSNP6043747	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C										T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28025683					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159803	NES09310928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60732221 () rs orientation: forward

Symbol	Name	Function Class
Gm74814	predicted gene, 74814	13 bp upstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr396989	regulatory region 396989	1382 bp upstream
Rr557735	regulatory region 557735	24 bp distal
Rr557736	regulatory region 557736	within coordinates
Rr557737	regulatory region 557737	674 bp proximal
Rr557738	regulatory region 557738	1686 bp proximal
Tssr17890	transcription start site region 17890	68 bp upstream
Tssr24237	transcription start site region 24237	885 bp downstream
Tssr24238	transcription start site region 24238	957 bp downstream