rs28025688 SNP Detail

Summary

• ID
  rs28025688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60731872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAAAGGG ATGAGTAGCT
  CTCTTAAAAA ATTTCAAAAC ATCTATTTCC TGTCCCGTTG CTTTTGTTGT TGTTTTATAC
  TTTATTAGCA TTTTTTTTAA ATAAAAGAGA CTCTAAAAAT ATTTTTACAT CCCTTAACTG
  GTTGTTCGTC AATTCATTCA ACCAATGTCG GTGAGTGAGT ATGGTCGAGG CACCGGACAC
  Y
  GAGCAGGAAG GAGGAGCCTT CTGCGGTCGG TCGAGGAGGC AGGAGTAAGC TGATGCTAGA
  AGAAGCAGTG ACACATGGTG ACTCACAGGA TTTCAACATA GACTCCGGAA GAAAGACAAG
  CTGTGGATAC CAGGAAGCAA GGGAGCCAGC CTCTGAAACT CACAAAGCCA AGAGCAGCTG
  GAAGATAGGA ATGGTCGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38159808	NES09310923	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C	C	C	C	C		C	C	T
ss146652196	ENSMUSSNP4310066	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28025688					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159808	NES09310923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60731872 () rs orientation: forward

Symbol	Name	Function Class
Gm74814	predicted gene, 74814	within coordinates
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr396989	regulatory region 396989	1731 bp upstream
Rr557735	regulatory region 557735	within coordinates
Rr557736	regulatory region 557736	326 bp proximal
Rr557737	regulatory region 557737	1023 bp proximal
Tssr17890	transcription start site region 17890	417 bp upstream
Tssr24237	transcription start site region 24237	1234 bp downstream
Tssr24238	transcription start site region 24238	1306 bp downstream