rs28025797 SNP Detail

Summary

• ID
  rs28025797
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60693641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTAGTC TTGATGTGTG
  TAACATGAAG CCTGGGTCAC TGATTCCATT CCAACTCAAG GTCCATCAAG ACATTGTGTA
  AGTACAGACA ACAGAGCCTC AGGAAGATGT CAAGCTAGTA GGAAGTGCTC TGCCAGTATA
  GTCTGTGCCA AGCCCATCTT TCCCAGGCCT CTCTCTAAAT ATGCCACAGC CAGTTCTAAT
  M
  TTAAAAGTGA CCTATACACA GTGCTGGTCC AGTCTCCCAC CTCCTACTCT CAAGCTCCTT
  TGCACAAGCA CATTAAAAAC AGAGTGGAAC AAATCACACT GAGTTCAAGT GGCAAAATAT
  GAGAGGCGGG TGGGGGTGGG GTGGGATGGG GCGTGGCTCC CTAGGAAAGG CTATCCTCAA
  AACCACTAGA CTGCCTGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38159917	NES09312235	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28025797					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159917	NES09312235	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60693641 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm74809	predicted gene, 74809			294 bp upstream
Rbms1	RNA binding motif, single stranded interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr557722	regulatory region 557722			within coordinates
Rr557723	regulatory region 557723			305 bp proximal
Rr557724	regulatory region 557724			623 bp proximal
Rr557725	regulatory region 557725			1736 bp proximal