rs28029571 SNP Detail

Summary

• ID
  rs28029571
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84570541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT GTGCTGTTAG CATCAGAATC
  S
  AGAGACTGTA GAAAGGACAA AGAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss38172801	NES09243013	PERLEGEN	MM_PANEL2	f	SNP	G			G	C		C		G
ss146834280	ENSMUSSNP509439	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		C
ss320371977	CHEV_2_84580354	CHEVERUD	SCREENING_POP	f	SNP						G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs28029571					SNP	G	G	C	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172801	NES09243013	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84570541 () rs orientation: forward

Symbol	Name	Function Class
Gm19426	predicted gene, 19426	1967 bp downstream
Mir130a	microRNA 130a	918 bp downstream
Rr373462	regulatory region 373462	1472 bp upstream
Rr560318	regulatory region 560318	1660 bp distal
Rr560319	regulatory region 560319	1431 bp distal
Rr560320	regulatory region 560320	304 bp proximal
Rr560321	regulatory region 560321	665 bp proximal
Rr560322	regulatory region 560322	1378 bp proximal
Ypel4	yippee like 4	1542 bp downstream