rs28029735 SNP Detail

Summary

• ID
  rs28029735
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84491715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCCATT TCATGCATGA
  GAAAAATGAG TCTCTGAGAA GTTAGGTTAC CTGCATGATA TTAATACAGC TATGCTACTT
  TAGAACGGAG CCAAGACTCC CCCTGTCATA ATAGTCTTTC TTGACATTAT CCTCGGGGTA
  ACTTCTCAGC TTGTGTTTCT TCAACTCATT AGCTTTTAAT TTTTTTTTTT TTTGCCATTT
  M
  AAAGACAAAA ACATAAGTTA GGGTTAATCT TAACTCTGAA ATATATTATC TCCCCACAGG
  AATCTGAACC AGGAAAACCT AGAAGGTTTA TTAACCAAAT ACAACATGTG CTCTCCTGCC
  AGTTCCAAAA TCCTGTACAG GAACCCCCGG TTCCTCCGGG TAGCTTTTCT ACAGCTTCAT
  CACCAGCAGC AGAGTGGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38172967	NES09245548	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28029735					SNP	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172967	NES09245548	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84491715 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Btbd18	BTB domain containing 18			Intron
				Noncoding-Transcript-Variant
Cpgi11859	CpG island 11859			1952 bp distal
Gm28635	predicted gene 28635			Intron
Rr560294	regulatory region 560294			1870 bp distal
Rr560295	regulatory region 560295			760 bp distal
Rr560296	regulatory region 560296			885 bp distal
Rr560297	regulatory region 560297			750 bp distal
Rr560298	regulatory region 560298			1597 bp proximal
Rr560299	regulatory region 560299			1698 bp proximal