rs28029739 SNP Detail

Summary

• ID
  rs28029739
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84490658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACTCTTC AGTGCTACCT
  GACAGAAAAC TACGTAACGG TACCGGAAAA AGAACGCACA GTTGTACGGT GAGTGGAGGT
  GGGGAAGTGG TCATGACACA TACACACACA CACACACACA CACACACACA CACACAAACT
  AGACGTGTAG GTCAGAATAT TCATTTTATT TGGTGGAGAA GAGTCAACTG CTTACCTCTC
  S
  TCGCTCCACT GTTAGCCAGG CAGTTAACCA GGGACACAAA GTCCACAGTA TTGCAAATTG
  ATGAGGCCAG TCTGGCTCAC TTTGGTCAGT CAACAACTCA CTTTGCTCTT GTTTCTCTGC
  AAGACCTCCC ACATCCTGTC TTGTCTCGAT TGTGCACCCT CTGCTGGTTA GTGTAATAAG
  TGAAAGGGAA GTGCTTATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38172971	NES09245587	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28029739					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172971	NES09245587	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84490658 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Btbd18	BTB domain containing 18			Intron
				Noncoding-Transcript-Variant
Cpgi11859	CpG island 11859			895 bp distal
Gm28635	predicted gene 28635			Intron
Rr560294	regulatory region 560294			813 bp distal
Rr560295	regulatory region 560295			within coordinates
Rr560296	regulatory region 560296			151 bp proximal
Rr560297	regulatory region 560297			286 bp proximal
Tssr18670	transcription start site region 18670			1232 bp downstream