rs28029742 SNP Detail

Summary

• ID
  rs28029742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84489397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGTCAACTC CCTGGAGACT TCGCCTCCCA CCAAGGCGCC
  CCTCCTCGTC TGATTGGCTC GCCCAGGAGC GGCCGTCCAA TGAGGATGAC GTATTCCGGA
  Y
  GCGCGGAGGG AGGAAGGAAG CAGTCAGGAA CCCTCGACGC CCGGAGCGCG AGGCTGGCAG
  CGCGCGGTGT TTAGCCTGGG CCGCGTGGCC TCAGACCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38172974	NES09245625	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	C	C		C	C	T	C		T
ss45233230	mCV22809177	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss146833653	ENSMUSSNP6479832	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320371851	CHEV_2_84499210	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28029742					SNP	C	C	T	T	T	C	T	C	T	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172974	NES09245625	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84489397 () rs orientation: forward

Symbol	Name	Function Class
Btbd18	BTB domain containing 18	26 bp upstream
Cpgi11859	CpG island 11859	within coordinates
Gm28635	predicted gene 28635	Intron
Rr560294	regulatory region 560294	427 bp proximal
Rr560295	regulatory region 560295	1134 bp proximal
Rr560296	regulatory region 560296	1412 bp proximal
Rr560297	regulatory region 560297	1547 bp proximal
Tssr18670	transcription start site region 18670	12 bp upstream