rs28029743 SNP Detail

Summary

• ID
  rs28029743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84489370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGCCACAGC CCAGCCGGCT CCCCTCGGCG TCAACTCCCT
  GGAGACTTCG CCTCCCACCA AGGCGCCCCT CCTCGTCTGA TTGGCTCGCC CAGGAGCGGC
  Y
  GTCCAATGAG GATGACGTAT TCCGGACGCG CGGAGGGAGG AAGGAAGCAG TCAGGAACCC
  TCGACGCCCG GAGCGCGAGG CTGGCAGCGC GCGGTGTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38172975	NES09245624	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	C	C		C	C	T	C		T
ss45209615	mCV22809178	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss146833647	ENSMUSSNP4627761	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320371850	CHEV_2_84499183	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28029743					SNP	C	C	T	T	T	C	T	C	T	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172975	NES09245624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84489370 () rs orientation: forward

Symbol	Name	Function Class
Btbd18	BTB domain containing 18	53 bp upstream
Cpgi11859	CpG island 11859	within coordinates
Gm28635	predicted gene 28635	Intron
Rr560294	regulatory region 560294	454 bp proximal
Rr560295	regulatory region 560295	1161 bp proximal
Rr560296	regulatory region 560296	1439 bp proximal
Rr560297	regulatory region 560297	1574 bp proximal
Tssr18670	transcription start site region 18670	39 bp upstream