rs28029745 SNP Detail

Summary

• ID
  rs28029745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84489039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGTGGTCA GAAACCAGTC CGTATTTTTT TTTTTTCTGA
  ACCTGTCTCT TCTTAGAAAA TACCTATCTT AATCAGCAAT CTTGCAAGCA GAAACGTATG
  Y
  TTGGTTTTTT TTCTCCAAAA GATCTAGAAG GATCTAGCCA GGACAACGGT TATTTGCAGC
  CTCTTCAAGA AGAACACGCA CACCAAAAAA AAAAAAAAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38172977	NES09245621	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28029745					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172977	NES09245621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84489039 () rs orientation: forward

Symbol	Name	Function Class
Btbd18	BTB domain containing 18	384 bp upstream
Cpgi11859	CpG island 11859	150 bp proximal
Gm28635	predicted gene 28635	Intron
Rr560294	regulatory region 560294	785 bp proximal
Rr560295	regulatory region 560295	1492 bp proximal
Rr560296	regulatory region 560296	1770 bp proximal
Rr560297	regulatory region 560297	1905 bp proximal
Tssr18670	transcription start site region 18670	370 bp upstream