rs28030481 SNP Detail

Summary

• ID
  rs28030481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83481503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCACCATAA GTGCTGATCA TAAAATGAGA ATCTCTATAA
  TTTAGCTTCC AATGAACAAA TAAAACCCCA GATTTAACTA AAATACTGCT CCCCGATTAA
  R
  TTTGTTTTAT TGTCTTAGAA ACTAGTCCAT AAATTTGTGT GGCCATTCTT GTACAGTATT
  CTGCAAAGTA AGTCCAGCAG TACTTCATCT TTCAGCATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38175813	NES09394894	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	A	G	G		G	G	G	G		G
ss45201161	mCV23818432	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		A
ss146812231	ENSMUSSNP3463609	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320367692	CHEV_2_83491316	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28030481					SNP	G	G	A	A	A	G	A	G	G	A	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38175813	NES09394894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83481503 () rs orientation: forward

Symbol	Name	Function Class
Rr44876	regulatory region 44876	1898 bp proximal
Zc3h15	zinc finger CCCH-type containing 15	within coordinates