rs28030513 SNP Detail

Summary

• ID
  rs28030513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83458054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCTATG GTGCAGCCTC
  TTCTTCATCC GGACTAAAGT TCTTAAAGCC TCAACAGACT TAAAGTCGCT TCCTCCTAAA
  TGTCAAAACG GAACAGAATG AGTGGGGGGG AGGGGGGAGG ATTAGCACTG AACTCAAGAC
  CCTATGTCTG ATAAGCGTGC TCACTGTCAC TGAGCTACAC CCTCAGCGCA TGGATAAATC
  R
  TAAGTGACAA ATCCTTACCA CAGTATGGAA AGCAGGTCAG TTTTGTGAAT TGCCTCCACT
  AATTTCACCA TCCAGTGAGA AAAGCTATGG ATTTGTCTGC TCAAAAAGCT CTGGAATGCA
  CAGGATTGAG AGAACATAGG CAAACGCCGA AAGCAAACGC CAAAAGCCAG CCCTGTATTT
  TTCGCTTGAC TACCTCCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38175845	NES09395892	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs28030513					SNP	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38175845	NES09395892	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83458054 () rs orientation: forward

Symbol	Name	Function Class
Rr397082	regulatory region 397082	269 bp downstream
Rr560157	regulatory region 560157	1738 bp distal
Rr560159	regulatory region 560159	1789 bp distal