rs28032181 SNP Detail

Summary

• ID
  rs28032181
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83848638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGTCTTT CATGGATATT
  GTCCCAAAGC TAGAACACAT TTCCTCTGCC ACCAAAGTCT GTAGGCCACT GTCTGTCTGG
  ATCTTTGAGG ACAGTTGTAT ATCAACTCCT GTCCTTTGAG TTCTGTGAGC TCTAAGCATC
  CTGGTCATTC AAGGACCTGC CTATTTGCCC AGGTGGAGAG ACAGACCAGC TCCTCTGCGA
  S
  TCTACCATAA ATTTGGAACA GATTTCCCAC TCTTTTCTTG CCCTCACGAG GGAATGGCTT
  TGAGTTAATT TGGTCTCTAT TTGCTGGATC CTCTGAAGTT GCAGCATGTC TCATTGGAAT
  CTGTTCCGTT TCAACCATGT TCTTATGTAG CTAAGACAGG AATCAGTCAT TTGGATGCTG
  TCCAGAAAAA GCAACATGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38174708	NES09382466	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28032181					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38174708	NES09382466	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83848638 () rs orientation: forward

Symbol	Name	Function Class
Gm75328	predicted gene, 75328	within coordinates
Rr560213	regulatory region 560213	1652 bp distal
Rr560214	regulatory region 560214	96 bp proximal
Rr560215	regulatory region 560215	1310 bp proximal
Rr560216	regulatory region 560216	1606 bp proximal
Tssr552	transcription start site region 552	438 bp upstream