rs28033979 SNP Detail

Summary

• ID
  rs28033979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79398062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTTGTAC TCCAATGCCC
  ACGGAATTTA CATTTCAAAG ACTTTTTAGA GAGCCAAGAT TCCTCCATGA ATAGTGAGCC
  CAGCTAAGGA CAACAGGTCA GACAAGGACC TTGTCAGCAG AGGTGAAGGC ATGCACTCTA
  ATTATAGCCA TGCTTCTCTC AGCTGGGTCT GAAAGGAGTC AGAAATACTT TTGAAATCAT
  R
  ATTGCACAAT CACTTAGACT TCCTATTGGT ATTAGCCTGG AAAGCTCAAG GATCCTCATC
  TTCATGATTA TCCGTGAATA ATGCACACAA TATAGATTAT GGGACATGGT AGAAAAGAGT
  ACATGACCTG CTTTTCCTTC CCCTCATCTA TACCATCAGC CCCATGCACT GAAGGAAACC
  TGAATTCACT TCTTGTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ
ss38185699	NES09238921	PERLEGEN	MM_PANEL2	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ
rs28033979					SNP	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38185699	NES09238921	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79398062 () rs orientation: forward

Symbol	Name	Function Class
Gm75287	predicted gene, 75287	within coordinates
Rr560005	regulatory region 560005	762 bp distal
Rr560006	regulatory region 560006	within coordinates
Rr560007	regulatory region 560007	1980 bp proximal