rs28033980 SNP Detail

Summary

• ID
  rs28033980
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79397105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAAAGTG AGTGAGAAGT
  GCATAGCTCA GGTTCGCCTC AAAGGGAACT CTGGGAGTAA AAAAAAAAAA AAAAAAAATC
  CTCAGGACTA TAGAAACAAT GAGGTGAACC CTAGCAATCT TCTTCAGTAT CTAGCTGAGC
  TAGCCATGCT TGACAACCTG GTAAACTTGC CTCTTTTGTC TTGCAGGCAG CCACTAAAGT
  K
  CCTGCTACTC TGGTCTCTGT TTGATTCCTT TGTGTTGGGG GCCAGGGTGC GGGTGAGGCT
  CCTGTTTGAA GCAGAAATGT TGTAATTGAA AGAGAATGGT TTCCCAGTGG CCCACAAAGC
  TTAAATTGTT ACTGTTATGT ACTCATGTAG CATTGTGGCC TTGGGCAAAG TCTTAACAGT
  TCTGAAACAG TTTCTTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ
ss38185700	NES09238967	PERLEGEN	MM_PANEL2	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ
rs28033980					SNP	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38185700	NES09238967	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79397105 () rs orientation: forward

Symbol	Name	Function Class
Gm75287	predicted gene, 75287	within coordinates
Rr560005	regulatory region 560005	within coordinates
Rr560006	regulatory region 560006	443 bp proximal