rs28033981 SNP Detail

Summary

• ID
  rs28033981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79395809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCATTC TTTATGGGAA
  TCAGTTCTTT CCTTCCATCA CATGGGTTCC AGGGATGAAC CGAGGTTTTC AGATTTGGCA
  GCATGAACCT TTATCTACTG AGCCAACTCA CTGCCCTGGA AGAGCACACC TTTAAACAGT
  GCTGGCAACA CCAAACAAGA TTTTTTTTTT TCTCCTAAAC AAACCATGTA ACTGCCTAGA
  R
  CCATTCTCCT TTTCAGTGGA CACTGAACAT AGGGCCTTGT GCACACTGGA CAAATGTTCT
  ACCATTGACT TACATCCCAG TCTAATCTAA AATCTCAACT TAGTTATAGT AAATATCAGT
  AATTTATAGG GTAGCTTAGA TTAATAGGAG CTATACTTCA TAAGCATTAT ATAATTTTAT
  ATACTTGCCG GCCAGGCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss38185701	NES09238987	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs28033981					SNP	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38185701	NES09238987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79395809 () rs orientation: forward

Symbol	Name	Function Class
Gm75287	predicted gene, 75287	639 bp downstream
Rr560005	regulatory region 560005	820 bp proximal
Rr560006	regulatory region 560006	1739 bp proximal