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rs28033982 SNP Detail
Summary
  • ID
    rs28033982
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:79395009 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATAGAAAGTA GAATAAGAAC
    CCTGTCAGGT TGCGTCCAAA GCCTTTGTGT GTCTCCATGA TCTTTAAGCT GCTCACTCTG
    CACCGCAATG GTTTCCTTCC TTAGCTTTTT CACTTCAAGT TATCATGACT CAATTTGAGT
    ATATTAGGCA GTGATCTTTC TCATTAATTT TATCACTGTG TTTATTTACA AATCTTGTTG
    Y
    GACATTTAAA TCATTTTTTG GATGGATTAA GATAAATATG ACTCAAACTG GATTAGATGA
    GTGGTTCCCA AAGTCAGCCT ATATCAGAAT TGCCAAAGCC TGACTTGTTC AACCCCATCC
    TGTCTCTGAT GTTCCGGAAG GTTGTAGAAT TTTCACTCTA AGAAGTTCCA GCAGAGGCTT
    GTGTTAGGTC TCTAGGACTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
BTBR T<+> Itpr3/J
DBA/2J
KK/HlJ
MOLF/EiJ
ss38185702 NES09239031 PERLEGEN MM_PANEL2 f SNP C C C T
SNP Consensus Information
SNP Consensus Type
BTBR T<+> Itpr3/J
DBA/2J
KK/HlJ
MOLF/EiJ
rs28033982 SNP C C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38185702 NES09239031 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:79395009 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm75287 predicted gene, 75287 1439 bp downstream
Rr560005 regulatory region 560005 1620 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory