rs28040059 SNP Detail

Summary

• ID
  rs28040059
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60122316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTCATG TAAAGAGACA
  GACATGACTT TGCATGTCTG AGACCTCAAC ACTTCTGGAC AGAGACAAGT GTTTCTGTGG
  AGCTTGCTGG CTAACTCACT TAGACAAAAT TGCAAGCTTC CAGTTTGCAA GATAAGCAGA
  CAGACAGCAA TGGAGGAAAA CACTTGATAT CCTCCTTGGA TCACTTTCAC ATTCATGTGC
  M
  TGTGCTAAAC ATACACACAC ACACACACAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGCA CTTGAGAGAG CGCACGTACA CCACACACAA AAGAGAAACA CTGAGCCAAG
  GAGATTAAAA TAATTTAGAC ATACAAAGAT TTATTCTTTA AAAAGTGCTC ACAAAGTCTT
  AAAATACCTT AACTCGCAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38162090	NES09320695	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28040059					SNP	A	A	A	C	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38162090	NES09320695	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60122316 () rs orientation: forward

Symbol	Name	Function Class
Ly75	lymphocyte antigen 75	131 bp downstream