rs28040063 SNP Detail

Summary

• ID
  rs28040063
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60120842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTGGGG AGCATATAGT
  GCCTGTAATG CCAATACCAG GGGATCCAAG ACCCTGTTCT AGTCTCTGCA GCCACCTGCG
  TTCATTTGCA TAGTTTAACA CATATGTATA ATAAAAATGA CGTTTAAAAA ATTGAGATTG
  CAAACTATGA ACATCTTTGC CTCAAACAGA CTTATGAAGG AAGCAGAAAG TACCTGGCAA
  R
  CTGTTGCCAT TGAAAGTGCT GTGCCTTGTG ATTTAATTTT TAATACAGTT GCCGGGTGTG
  ATGGCGCACG CCTTTAATCC CAGCACTTGG GAGACAGAGG CAGGCAGATT TCTGAGTTCG
  AGGCCAGCCT GGTCTACAGA GTGAGTTCCA GGACAGCCAG GGCTACACAG AGAAACCCTG
  TCTCAAAAAA CAAAAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38162094	NES09320808	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28040063					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38162094	NES09320808	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60120842 () rs orientation: forward

Symbol	Name	Function Class
Ly75	lymphocyte antigen 75	1605 bp downstream
Rr557628	regulatory region 557628	1559 bp distal