rs28040064 SNP Detail

Summary

• ID
  rs28040064
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60120542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATAATAG ACTAAGCCTC
  TAAAACTAAA AGCCATTCTC GATGAAATGT TTTCCTTTAT AAGAGTTGCT GTGGTCTCTT
  CACAGACATG AAACCCTAAG ATACATACAT ACATACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACAAAACA TGTAGATATG CTGTGTGATG AGTGACAGAT
  K
  ATCTAAGAGT TAGTGTTAAC AAACTGAGCT CAGGGGCTGG AGAGAAGGCT TAGAGGTTGT
  GTGCTACCCT TTTAGAGGAC CTGAGGTTGG TTCCCAACAT CTCCTGGGGA GCATATAGTG
  CCTGTAATGC CAATACCAGG GGATCCAAGA CCCTGTTCTA GTCTCTGCAG CCACCTGCGT
  TCATTTGCAT AGTTTAACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38162095	NES09320859	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28040064					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38162095	NES09320859	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60120542 () rs orientation: forward

Symbol	Name	Function Class
Ly75	lymphocyte antigen 75	1905 bp downstream
Rr557628	regulatory region 557628	1259 bp distal