rs28040752 SNP Detail

Summary

• ID
  rs28040752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60430702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGATTCTA ATTCTGAACA
  TTTTTCAAAT GCAAATCAAG TTCCCGGGAA TCGTTTTGAT GATTTTTTTT TTTGAGGCAT
  TAATGCAACA GAGTTTATAT TCTTCAAGGG ATCTTGAATT CATCTCTTTG CTTGGGATAT
  TCTTTTCTTG ATTGTTTCCA ATCAGCGAAC AATGTCTCAC CTTCATGCCC TGAATGACTG
  R
  TTGTTGAATG ACCTGTTATT ATCTTAAGTC GACCTCCTTT TGAAGCGACA AAGCATGATA
  AACCATACAG TGCAGTAAAC CTTTAACGCA AGCGGAGTTG ACTTTCTCTG GCCGAAGGAG
  GTCTGTCTAC CCATCTGAGG AAAGGCCTGC TTTGTGCTTC TCCCTGTGCT TGTAGGTCAC
  GTTCTTAAAA GTGCTGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38161177	NES09309436	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28040752					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38161177	NES09309436	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60430702 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Tssr24206	transcription start site region 24206	445 bp upstream