rs28040757 SNP Detail

Summary

• ID
  rs28040757
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60430149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATCTTTA GTGTTACTAG
  CAACACATTT TATAAATTAC CCCTTCCTCC TCTTTCAAAC AAAATACTTG TGTCCATGTC
  TTTTAAGAGT ACAAGCCCAT GACTTAATTT TCAATCTCTC ACTTGGGAAG TCACTCTGGG
  AGAACTGGAT TCTTTCAGTT GATGGGAAAT CAGACTCTCA TTTCTCATAC ATAAAAGTTA
  M
  GATCTCTGAG CATGAAATGG AAGGCAGAGA CAGGCAGTTC CATGGTTGTG AGTTCAAGGC
  CAGGCAGCCT GGTCAGTTCC AGAATGGCCA TAGAGACACC CTTTCTAAAA AAAAAAAAAA
  AAGAAAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA
  AAAGAAAAAA AGAAAAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss38161182	NES09309555	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs28040757					SNP	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38161182	NES09309555	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60430149 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Rr54475	regulatory region 54475	1193 bp proximal
Tssr24206	transcription start site region 24206	103 bp downstream