rs28040764 SNP Detail

Summary

• ID
  rs28040764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60429165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTGGAC CATTCAGGGA
  TCCAAAGGAG ATTCATTAAG ACTTTTAAAT TTAGCTGTGT ACTCCCTAAC AGACTAATTT
  ACCTGAGTCA TTTAAAAACC AGAAAAGAAA GAACCTAGAT GATGTGGACA CGTACACAGA
  CCTATATGGC AGGAGTGAAG GAGGTTTGAG ACCAAGCTGA CAATTCAACA GACAGCTGTC
  R
  AAGCCTCCAC TCACAAACAC AGAGCTGTTC ACCTAGGGAG TGGATTCACC TTAATATCCA
  GTGAAGGCAA CACACACAGC ACAAAAATAC AGCAACCGGT CCACATTCCG GGGGCCTAGG
  TGCTAATTGT TTTGTGTCAG TATACTTTCA AACTAAGACA GTTATACCAT AACTAATACA
  ATCCTTCCAT CATTTTACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss38161189	NES09309544	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs28040764					SNP	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38161189	NES09309544	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60429165 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Tssr24206	transcription start site region 24206	1087 bp downstream