rs28040767 SNP Detail

Summary

• ID
  rs28040767
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60428515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTAAAA AAGGACATCA
  GTCACCTGGA TTAGGGCCTC ACACTGAAAT TTATGTGCAT CTTTAAAAAT CCTATCTGTA
  ATTTTACAGT CTAGGGGTTA AGACCTGGTT CTTTAAGGGC GGTATTCAGG GGAAATATTT
  AAGCTCATAA CACCAATACT AAAGAAATTG GTTTTACCAA ATGTGGGATA ATGTGCTGCT
  Y
  TTCTCCTTGG CCCTTGACTG AAATCACCAA AGCAAGTTAG AGTAACTTAC AGAAAGATCC
  AGAAACGTAA GAAAGGGGTT TGCACCAAGT AAATAAAAGG CATTACCATC CAACCAAGGC
  TCATTGTTTA AATTATGTTT ATTTATGTCA ACGCAAAATA CAATAAAACC ACTTTAAAAA
  AAAAAACAAC CATTTTATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38161192	NES09309540	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28040767					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38161192	NES09309540	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60428515 () rs orientation: forward

Symbol	Name	Function Class
Gm13567	predicted gene 13567	1877 bp upstream
Itgb6	integrin beta 6	121 bp downstream
Tssr24206	transcription start site region 24206	1737 bp downstream