rs28041876 SNP Detail

Summary

• ID
  rs28041876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62174055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTA TATGTGTCTA
  TGTGTCTGTA TATATGTGTG TATGTATCTC TGTGTGTGTC TGTGTGTATG TGTCTGTGTG
  TGTGTGTCTG TGTGTATGTG TCTGTGTGTT TGTATGTGTG TGTGTACTTA AGGTACTACC
  AAGGTGTAAA ATTGACTGTA TTGTGGGAAA ACACAACAAG AGTTTACACA CTGGGCTACT
  Y
  TTCTACAGGG AGCTAGGTCA TTTGCCAGGA GCATTGTAGT TATGAATGAA ATAAACAATG
  CTTAAGCAGA TTACAGGATA TGGACTAGAA AGAGTAAGGA GAATGAAGTA TGCAGCCTCA
  GAGGAGACCT CTGTCAGAAA TATAAATAGC CTGATTATGA GGCTTCTTTG TAAGTAAAGA
  TGTCTAGTGT GTCATCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38156112	NES09299218	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28041876					SNP	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38156112	NES09299218	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62174055 () rs orientation: forward

Symbol	Name	Function Class
Dpp4	dipeptidylpeptidase 4	Intron
Rr557853	regulatory region 557853	1416 bp distal
Tssr507	transcription start site region 507	174 bp upstream
Tssr24253	transcription start site region 24253	58 bp upstream
Tssr24254	transcription start site region 24254	43 bp upstream
Tssr24255	transcription start site region 24255	10 bp upstream
Tssr24256	transcription start site region 24256	17 bp downstream
Tssr24257	transcription start site region 24257	106 bp downstream
Tssr24258	transcription start site region 24258	256 bp downstream