rs28041878 SNP Detail

Summary

• ID
  rs28041878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62172904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG CAGAATAGCT CCTGAGTTTA
  Y
  AGGACTTTCC ATGCTTGGAC ATAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38156114	NES09299258	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C		T	T	T
ss146702126	ENSMUSSNP2495724	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28041878					SNP	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38156114	NES09299258	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62172904 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dpp4	dipeptidylpeptidase 4			Intron
				mRNA-UTR
Rr557853	regulatory region 557853			265 bp distal
Tssr507	transcription start site region 507			962 bp downstream
Tssr24253	transcription start site region 24253			1073 bp downstream
Tssr24254	transcription start site region 24254			1097 bp downstream
Tssr24255	transcription start site region 24255			1110 bp downstream
Tssr24256	transcription start site region 24256			1168 bp downstream
Tssr24257	transcription start site region 24257			1257 bp downstream
Tssr24258	transcription start site region 24258			1407 bp downstream