rs28041879 SNP Detail

Summary

• ID
  rs28041879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62172104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGGCTCAT TTAAAAAACA AAGGAGGGCA GCTTTATTCT
  AAAACCTGCT GTGCACCAAA AATAGGCAAC TTAGATTCAG GGTTCCTCTC AGACTCCGAT
  Y
  CCCGCGCGCG GATTCAGTCC TCCAGGCTCA GAGGAAGCAA CCAGCGGAGC GGGGCTCAGT
  GGAGACAATT CCCTCAATGC ATTTACCTCA CTTTTCTCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38156115	NES09299293	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28041879					SNP	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38156115	NES09299293	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62172104 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dpp4	dipeptidylpeptidase 4			Intron
				mRNA-UTR
Rr557852	regulatory region 557852			1761 bp distal
Rr557853	regulatory region 557853			within coordinates
Tssr507	transcription start site region 507			1762 bp downstream
Tssr24253	transcription start site region 24253			1873 bp downstream
Tssr24254	transcription start site region 24254			1897 bp downstream
Tssr24255	transcription start site region 24255			1910 bp downstream
Tssr24256	transcription start site region 24256			1968 bp downstream