rs28041880 SNP Detail

Summary

• ID
  rs28041880
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62171366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCATTTG TCCATAGTGG
  GTGATGATCT TCAAAAAGTC TTAGGGGGGT CACTGCAGGG GTCACTGTAT TGAGTCAAAG
  CCTGAGTTTC ACGATCTCCC AATCTTCATA ACTATTTTTA AAATATCCGA AATAATATAC
  CTGCTGTGGG GAAGTTAACC ACGTAGGTAC ATGCCTTCAC AAATGGTATA CTAGCTTTGA
  K
  CAGGGCACAC ACTGACAATA CACCTGGTGG CATCTCTTTC CTCAGTAGTA AAGAGGTCCA
  AATGCACAGG TGTGTTCTCT TGGAGATTTG GGTTCCTTTA AAGTCGGGGT CATTTATCCC
  CTGGTACTGA CTCATCTCAT TGAGTTGTAC TGAAAATTAT GTTCTCTTCC AAATTCTATA
  GTTCTATGTG TCAATGGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38156116	NES09299383	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28041880					SNP	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38156116	NES09299383	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62171366 () rs orientation: forward

Symbol	Name	Function Class
Dpp4	dipeptidylpeptidase 4	Intron
Rr557852	regulatory region 557852	1023 bp distal
Rr557853	regulatory region 557853	512 bp proximal