rs28044272 SNP Detail

Summary

• ID
  rs28044272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73932883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTTGGG CTCCAGCCTT
  GAGGAATGGG ATGCACTTTG TATCGATTTG GAGCTACCTC TAAAGAAACA TGAAATGTGT
  GTTTCAGAGA AAGGGAAAAG ATTCATGAAG CTTGCAAACG AGTCCTGCAG GAAGCTGGGT
  CTTGGGTTAA AGAGCTTGGA ATTTTGGTGA CTATTCATGT GGTCAAGTTG GAGAAGGCAC
  R
  TTGCTTAGTA TTTTTATTGG CCTCTCCCTT CCTTGGGAGA TCATTGTCTG TGGCCTCGCA
  AATATATTTG CAAACTGCTG TTGCTGCTGC CTCAGCTGGT GCTGTTGGTG GTTGTTGGTG
  GTGGTGGTGA TGTGTCTATG TGTTTCTATG CACTCAAACA GGCTGTGTGC CCTTTGGCTG
  CACTTGTTCA GGCAGGTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38190798	NES09620068	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28044272					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190798	NES09620068	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73932883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14388	CpG island 14388	402 bp distal
Frmd3	FERM domain containing 3	within coordinates
Rr101135	regulatory region 101135	within coordinates
Rr105564	regulatory region 105564	1718 bp proximal
Tssr37633	transcription start site region 37633	972 bp downstream