rs28044274 SNP Detail

Summary

• ID
  rs28044274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73932802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCTTCT TGTACCCTGC
  TGTTTCTCTG ACAGGAGCCT GATTTCTCTA GTGTGGTAAT GGACTTCTCC AAGTTTCCTA
  GAAATCTTGG GCTCCAGCCT TGAGGAATGG GATGCACTTT GTATCGATTT GGAGCTACCT
  CTAAAGAAAC ATGAAATGTG TGTTTCAGAG AAAGGGAAAA GATTCATGAA GCTTGCAAAC
  R
  AGTCCTGCAG GAAGCTGGGT CTTGGGTTAA AGAGCTTGGA ATTTTGGTGA CTATTCATGT
  GGTCAAGTTG GAGAAGGCAC GTTGCTTAGT ATTTTTATTG GCCTCTCCCT TCCTTGGGAG
  ATCATTGTCT GTGGCCTCGC AAATATATTT GCAAACTGCT GTTGCTGCTG CCTCAGCTGG
  TGCTGTTGGT GGTTGTTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38190800	NES09620066	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28044274					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190800	NES09620066	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73932802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14388	CpG island 14388	321 bp distal
Frmd3	FERM domain containing 3	within coordinates
Rr101135	regulatory region 101135	within coordinates
Rr105564	regulatory region 105564	1799 bp proximal
Tssr37633	transcription start site region 37633	891 bp downstream