rs28044277 SNP Detail

Summary

• ID
  rs28044277
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73931713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACAATGC AGGGCGCCTT
  TGAGTCGAAG AGAAGCAGGG CAGGGACCAT CTAGCAACCG CGATGGGAGG AGGGAGGAGG
  CGGCCAGTCG GAGGAAAGCA TCAGGGCCTA GCCTGACGCA GCAGCAGCCC TGGAAGTGGC
  CCCCGCCAGA GCTTCTGAGC GTCAGGGGAC AGTCGGTCCT GTGCCTCCTC CAACCGCGAG
  S
  CCTAGGAGGG TCCTGGGCTC CCACCGCCCT CAGCCTTCAA GCCCAAGCCA AGGGAGGTGC
  CCTCTGAGCT AGCTAGGAAA GGAGGCGGGG ATTGGAGCGT GTGAAGAGGA GAGGGAGGGA
  CGGGTTCTCC TCGCCACTCG CCGCTGGTGG CCGCAGGCGC CCTGCGCTGC CACGGTCTCC
  GGGCGGAGCT GCACCCGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38190803	NES09620063	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28044277					SNP	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190803	NES09620063	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73931713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14388	CpG island 14388	within coordinates
Frmd3	FERM domain containing 3	within coordinates
Rr101135	regulatory region 101135	within coordinates
Tssr37633	transcription start site region 37633	118 bp upstream