rs28044421 SNP Detail

Summary

• ID
  rs28044421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73962126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGAAGA CTCAGTTATA
  TGTATCTGGG TTACATGCCT GGGTTTCAGC CAGGTCAGAG TGGAGTAGAC TCCATAAGAG
  AAACTGGTAC CCAGGAAGAT CCCAGTGGCT GTCATAAGTG GTGAGGATCT TAGAAAATTT
  ATATAGGATA AATGGAATCT TGATTCAAGA ATTTTGGAAA TTCAGACTTC CATGATATCA
  Y
  AGAATTGGCA TTCATTACAG GACAGAGAGA TGACTGGGTC AAATGTCAAG GAAAATCTCA
  ATGAAAATTT TTCAGTAAAT GAAAATACTG AGTTACCACT GGCCATGGCC ACAGGGCCTC
  TTCAGCTAGC CATAACCAAA CATCTTCTCC TATACAGATG CAATTTGAAT GCACTGAGGA
  TTTGTTTAGC CCACTAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38190949	NES09619599	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28044421					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190949	NES09619599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73962126 () rs orientation: forward

Symbol	Name	Function Class
Frmd3	FERM domain containing 3	within coordinates
Gm11760	predicted gene 11760	499 bp upstream
Tssr1205	transcription start site region 1205	454 bp upstream